Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 1464 a.a., Lhr-like helicases from Xanthomonas campestris pv. campestris strain 8004

 Score = 1660 bits (4298), Expect = 0.0
 Identities = 866/1435 (60%), Positives = 1057/1435 (73%), Gaps = 25/1435 (1%)

Query: 8    HPVLELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDE 67
            HPVL+ FHP V+ WF R FA  T AQ  AWP I AG+  L+AAPTGSGKTL+AFLA +D 
Sbjct: 2    HPVLQHFHPVVAAWFGRTFAAPTPAQIAAWPAIKAGRHTLVAAPTGSGKTLTAFLAAIDA 61

Query: 68   LLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAV 127
            L+R+G+   G LP QT VIYVSPLKALSNDI LNL+APL GI   +  QGL    + TAV
Sbjct: 62   LIRDGLAQGGALPDQTRVIYVSPLKALSNDIHLNLEAPLHGIRAELLAQGLPDVPVRTAV 121

Query: 128  RTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKR 187
            RTGDTPQ+ERA  R++ PHILVTTPESLYVL+GSASGR  L HV TVIVDEIHA+A +KR
Sbjct: 122  RTGDTPQRERAQARRVPPHILVTTPESLYVLLGSASGRSALRHVRTVIVDEIHAVAADKR 181

Query: 188  GAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGR-----PCAIVDIGHARK 242
            G+HLALTLERLQ L ++P+ R+GLSATQ+P++ VAQFLVG G      PC IVDIG+ R+
Sbjct: 182  GSHLALTLERLQRLAEQPITRVGLSATQKPIDTVAQFLVGVGEDGAAAPCEIVDIGYTRQ 241

Query: 243  RDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLG 302
            RDLA+ +PP PL  V++ D W  VY  +A LA++HRTTLVFVNTRR+AER  RHL + LG
Sbjct: 242  RDLALALPPTPLSVVLSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLG 301

Query: 303  KEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAA 362
            K+ VAAHHGSLS+  RL AE+RLK+G+L VLVATASLELG+DIGD+DLVCQ+ SP SIA 
Sbjct: 302  KQRVAAHHGSLSRETRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQLGSPRSIAT 361

Query: 363  FLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQI 422
            FLQR GR+GH V G PK RLFP +RD+L+EC ALLD +R+GELDAL  P AP+DVLAQQI
Sbjct: 362  FLQRAGRSGHAVGGTPKARLFPQTRDELVECAALLDGIRRGELDALRFPIAPIDVLAQQI 421

Query: 423  VAEASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHRDAVS 482
            VAEA+ + W E  L   +R+A P+A L +  + A++RML EG++ R G R+ YLHRDAV+
Sbjct: 422  VAEAACEDWDEDALFALVRRAWPFATLSRATFDAVVRMLCEGFSTRLGPRAGYLHRDAVN 481

Query: 483  GTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNAS 542
              L  RRG+++TALTSGGTIP+  DY+V+LEPQA NIG+VNEDFAVES+ GD+FQLGNAS
Sbjct: 482  RRLHARRGARMTALTSGGTIPETGDYSVVLEPQAENIGTVNEDFAVESLTGDVFQLGNAS 541

Query: 543  YRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTV 602
            YRILRV+  +VRVEDA G PP IPFWLGEAPGRSD LS AV+RL+  I  +  L G    
Sbjct: 542  YRILRVDADKVRVEDAKGAPPNIPFWLGEAPGRSDALSLAVSRLREEIATR--LDGARHA 599

Query: 603  EVLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPY 662
               AWL     L    A QL++YLA   + LGA+P+Q  LVMERFFD +GGTQLIIHSPY
Sbjct: 600  GAQAWLCDEVGLAAEPAQQLVEYLANACQALGAMPTQHCLVMERFFDATGGTQLIIHSPY 659

Query: 663  GSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPI 722
            GSRINRAWGLALRKRFCRTFNFELQAAA+EDAIVLSLSTSHSF L+EV RYL+S SAE +
Sbjct: 660  GSRINRAWGLALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFALEEVARYLHSASAEHV 719

Query: 723  LIQALLDAPLFGVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLEN 782
            L+QALLDAPLFGVRWRWNA  AMALPRF GG KVAPQ+QRMKSEDL+A VFPDQ+AC EN
Sbjct: 720  LVQALLDAPLFGVRWRWNATNAMALPRFSGGNKVAPQLQRMKSEDLLATVFPDQVACAEN 779

Query: 783  IAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAIL 842
            + GER++PDHPLV QTL+DCLH++MDSEGWL +LR +ESGA+ L+ RDL APSPLA+  L
Sbjct: 780  LVGEREVPDHPLVAQTLEDCLHQSMDSEGWLQVLRGLESGAITLVARDLAAPSPLAAEAL 839

Query: 843  NARPYAFLDDAPLEERRTQAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPANPDEM 902
            NARPYAFLDDAPLEERRTQAV  RR+    SSDDLG LD  AIAAV  EAWPQP + +EM
Sbjct: 840  NARPYAFLDDAPLEERRTQAVQGRRYTP-QSSDDLGQLDPQAIAAVREEAWPQPRDAEEM 898

Query: 903  HEALMSLGAIGQVEVDANPCWDLLLRQLAKAGRALRLPDD---KLWLARERLNLLLALYP 959
            HEAL+ LG +  VE   +  W   L  L+ AGRA  L  D    LW++ ER+     LYP
Sbjct: 899  HEALVGLGVL-PVEEALDAQWQAWLSALSAAGRATCLAVDGGTALWISAERIEWFAPLYP 957

Query: 960  TAHREPALERLAGFDQPIEP---DHALSELLRARLSGHGPQTLAQIAAPLGKPVTDIEQA 1016
             A  +P L+  A  D  ++    + A+ EL+R RLS  GP  ++ + + +  P  ++E A
Sbjct: 958  HAVAQPPLQ--APPDCRVDDWQREWAVRELVRGRLSAVGPAQVSALCSAVRLPAAEVELA 1015

Query: 1017 LARLEAEGYVLRGHFSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDW 1076
            L  L+ EGYV+ G FS  A + +WCERHLLARIHRYT+ RLRREIEPVS +D+ RFLF+W
Sbjct: 1016 LIGLQREGYVMAGRFSAQALEEEWCERHLLARIHRYTLGRLRREIEPVSQRDYARFLFEW 1075

Query: 1077 QHLAPDERLRGPQAVAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRSGQFAW 1136
            QHL  D R+ GP A+A ++GQL+GF + AA WE+ELLPAR++DY P WLDE C +G+  W
Sbjct: 1076 QHLDADHRVAGPDALAGIVGQLEGFEAPAALWESELLPARVRDYQPAWLDELCTAGRTVW 1135

Query: 1137 SRL--AATVASSTLTSTPLVLLPRDQLNTWRSLAPAPAVDALGLRAQRVHEALKTQGALF 1194
            +RL      + + L  TP+VLLPR +   W +LA A     LG RAQRV E L+ QGALF
Sbjct: 1136 ARLRPGGGRSGNALRGTPIVLLPRREAQRWNALARADDDAPLGSRAQRVVEVLQEQGALF 1195

Query: 1195 FDELAHEAHLLPSELETALQELVGSGLARADSFTGLRSLITPATKRSSRNSRRGHPPLSS 1254
            FDE+A  A L+ +ELE  L ELV  G    DS+ GLR+L+ PA+KR S  SR+     + 
Sbjct: 1196 FDEIADAARLMATELEDVLSELVMRGRVHCDSYAGLRALLVPASKRPSALSRQRRRASAL 1255

Query: 1255 SMAHAGRWALLRR------SDAPPDHDQRLEHIARTLLRRYGVICWRLLARESDVLPPWR 1308
             +  AGRWA +R       ++A   H + LEH+AR LLRRYGV+CWRLL RE+  LPPWR
Sbjct: 1256 GIRDAGRWAPVRNLPSLPLAEASERHQEMLEHVARALLRRYGVVCWRLLEREAAWLPPWR 1315

Query: 1309 ELLRCYHRLEARGEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQVVSAGDPLN 1368
            ELLR Y RLEARGE+RGGRFIAG++GEQFALP+A+  +R+VR +        +SA DP N
Sbjct: 1316 ELLRVYQRLEARGELRGGRFIAGVSGEQFALPDAIAAMRRVRAQPLAQQWICLSASDPAN 1375

Query: 1369 LIGSLLPGAKVPAVIGNRLLYRDGIPVAVRMAGRYAYLVEASAQEQESWRQKLLR 1423
            L+G+LLPG ++  V GNR+ + DG+P+A     R+  L E S +  E   + L R
Sbjct: 1376 LLGNLLPGERIARVPGNRVAFLDGLPMAAWSGDRFQPLQELSHEHGEQALRLLQR 1430