Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score = 80.5 bits (197), Expect = 5e-19
 Identities = 109/447 (24%), Positives = 187/447 (41%), Gaps = 49/447 (10%)

Query: 26  FATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLV 85
           F + T  QA A P++  G+  L  A TG+GKT +  L +L++L     K Q  + A T  
Sbjct: 46  FVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPT-- 103

Query: 86  IYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAP 145
                      ++ + + A ++ + Q I  +GL    I      G     ++    K   
Sbjct: 104 ----------RELAIQVAAEIKNLGQNI--KGLKVLEIY-----GGASILDQMRALKSGA 146

Query: 146 HILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKP 205
           HI+V TP  +  L+     R  L   HT I+DE   +   K G    +T    QA   + 
Sbjct: 147 HIVVGTPGRVKDLI--TRDRLHLDECHTFILDEADEML--KMGFVDDVTWIMEQA--PES 200

Query: 206 LRRIGLSATQRPV--ERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDVW 263
            +R+  SAT  P+  E V +FL    R    VD+  + +    +E     +  V   +  
Sbjct: 201 AQRVLFSATMPPMVKEIVERFL----RNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAM 256

Query: 264 GLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLSKALRLDAEQ 323
             + +       E   ++VFV TR+  ER+   L  R  K   AA HG + ++LR     
Sbjct: 257 ARLLE-----TEETDASIVFVRTRQDTERLADWLCARGFK--AAALHGDIPQSLRERTVD 309

Query: 324 RLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGVPKGRLF 383
            +K G + +LVAT  +  G+D+  I  V     P  + +++ R+GR G       KG+  
Sbjct: 310 HIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGR---AGRKGKAI 366

Query: 384 PTSRDDLIECVALLDCVRQGELDALHIP------RAPLDVLAQQIVAEASNQAWHEQELL 437
              R + I  +  ++ V +  ++ + +P       + L  L Q++ A+    +   +   
Sbjct: 367 LLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSL--ERFA 424

Query: 438 DCLRQATPYAELDQHHYQALLRMLAEG 464
           D + +     E+D     A+L    +G
Sbjct: 425 DLVEKLQASLEIDATTLAAILLKRQQG 451