Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 830 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  215 bits (548), Expect = 1e-59
 Identities = 238/854 (27%), Positives = 363/854 (42%), Gaps = 82/854 (9%)

Query: 33  QAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDE------LLREGMKHQGELPAQTL-V 85
           Q + W  +  G+S LL A TGSGKT + + A L+       L  +    + + PA+ L V
Sbjct: 23  QKEVWAAVKNGESGLLHASTGSGKTYAVWFAALNRFAKANTLTADNKPRKRKPPAEPLSV 82

Query: 86  IYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAP 145
           ++++P++AL+ D    L+APL       AE  L+ P  +  +RTGDT   ERA   +  P
Sbjct: 83  LWITPMRALAADTARALEAPL-------AE--LDIPW-SVGLRTGDTSGSERARQSRRLP 132

Query: 146 HILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKP 205
             L+TTPESL +L+  A  +  L+ +  V+VDE H L GNKRG  L L L RL+      
Sbjct: 133 SALITTPESLTLLLTRADAQVALSTLKMVVVDEWHELIGNKRGVQLQLALARLRRW-NPQ 191

Query: 206 LRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIE------VPPVPLGAVMA 259
           L   G+SAT    +   Q L+G G     V +     +DL ++      +   P    M 
Sbjct: 192 LIVWGISATLGNQQHAQQVLIGDGG----VTVQGKIVKDLQVDTLLPSSIERFPWAGHMG 247

Query: 260 IDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEA--VAAHHGSLSKAL 317
           + +   V   + + A    + LVF NTR  +E   + L +     A  +A HHGSL++ +
Sbjct: 248 LRMLPQVVAEVESSA----SCLVFTNTRAQSEIWYQALLEARPDWAGLIALHHGSLAREV 303

Query: 318 RLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGV 377
           R   E+ LK G L+ +V T+SL+LG+D   ++ V Q+ SP  +A  +QR GR+GH     
Sbjct: 304 RDWVERALKEGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRP 363

Query: 378 PKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHEQELL 437
            +  L PT   +L+E  A  D V    ++    P  PLDVL Q +V+ A    +   ELL
Sbjct: 364 SRVTLVPTHSLELVEAAAAHDAVEARMIEPRESPHQPLDVLVQHLVSIALGGGFLPDELL 423

Query: 438 DCLRQATPYAELDQHHYQALLRMLAEG---YNGRQGVRSAYLHRDAV----SGTLRGRRG 490
             +R A  Y +L    +Q  L  +  G          R A    D V       L  R  
Sbjct: 424 GEVRSAWAYHDLSDEQWQWALAFVRNGGHSLTAYPDYRRAEPDEDGVWRVPDARLARRHR 483

Query: 491 SQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEP 550
             +  + S  T+  N  Y         ++GSV E F      GD F  G     ++RVE 
Sbjct: 484 MSVGTIVSEATV--NLKY-WKKGGGGGSLGSVEEGFIARLKPGDGFLFGGRLLELVRVEN 540

Query: 551 GRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLAWLQA 610
               V+ A G    +P W G     S EL+ AV      +++  A A G           
Sbjct: 541 MTAYVKRATGKKAAVPRWNGGRMPLSSELADAV------VEKFDAAARGQ---------- 584

Query: 611 TFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAW 670
            F   E  A   +  L   ++    LP +DTL+ E       G  L ++   G  ++   
Sbjct: 585 -FNSPEMRA---IKPLLEVQQHWSGLPRRDTLLAETLKSRE-GWHLFLYPFAGRHVHLGL 639

Query: 671 GLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPILIQALLDA 730
           G  L  R  R        A ++  + L  ++   +         +     P +I +L   
Sbjct: 640 GSLLAWRLSRHRPLTFSIAVNDYGLELLSASEIDWSQTLQAELFSETDLLPDIIASLNAG 699

Query: 731 PLFGVRWRWNAGVA-MALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLENIAGERQI 789
            L   R+R  A ++ +    + G  K   Q+Q   S  L   VF    A           
Sbjct: 700 ELALRRFREIARISGLVFSGYPGAAKSNRQLQ--ASSGLFFEVFKQYDA----------- 746

Query: 790 PDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAILNARPYAF 849
            D+ L+ Q   + L + +D +     LR++ S  + L    +   +PLA  +L  R    
Sbjct: 747 -DNMLLTQAEQEVLRQELDLQRLELTLRQINSRTLDL--HAIKRATPLAFPLLVERFRES 803

Query: 850 LDDAPLEERRTQAV 863
           L    L +R  + V
Sbjct: 804 LSSEKLADRIARMV 817