Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 487 a.a., ATP-dependent DNA helicase RecQ from Synechococcus elongatus PCC 7942

 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 102/371 (27%), Positives = 159/371 (42%), Gaps = 54/371 (14%)

Query: 33  QAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVSPLK 92
           QA+    I  G+  L+  PTG GK+L   +  L   LR G           L I V+PL 
Sbjct: 40  QAEIVEAIAQGRDCLIIWPTGGGKSLCFQVPAL---LRSG-----------LTIVVTPLI 85

Query: 93  ALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTP 152
           AL  +   +LQA   GI+ A     + APR   AV     PQ +   +  LAP  L++TP
Sbjct: 86  ALIENQVADLQA--RGIAAACLHSQM-APRDRKAVLQ-KLPQLK---LLYLAPETLLSTP 138

Query: 153 ESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRIGLS 212
                 + S      +A +  +I+DE H L   + G     T  RL A+ +  L R+G  
Sbjct: 139 ------LWSRLTEPTIA-IAGLILDEAHCLL--QWGESFRPTYLRLGAI-RPALVRLGKP 188

Query: 213 ATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAID-VW------GL 265
           +          +     R   I+ +   ++     +  P     V+A+  VW        
Sbjct: 189 SFPIAAFTATAYPQEVARLSQILQLQQPQRH----QRDPYRSNLVLAVKTVWTPRQRQNQ 244

Query: 266 VYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLSKALRLDAEQRL 325
           + D LA    + ++ L+++ +RR  E     L +R  +   AA+H  +S   R   EQ  
Sbjct: 245 LLDFLAK--HQGQSGLIYLRSRRDCETWADRLRNRGYR--CAAYHAGVSDRERRQIEQAW 300

Query: 326 KSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAG---HQVDGV----- 377
           ++G L   V +++  +GID  D+  V  V  P  ++ +LQ VGR G    +  G+     
Sbjct: 301 QTGSLPFAVCSSAFGMGIDKRDVRWVAHVHPPLLLSEYLQEVGRGGRDQQRAQGLTLVSE 360

Query: 378 PKGRLFPTSRD 388
           P G L P+ RD
Sbjct: 361 PSGWLDPSDRD 371