Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 849 a.a., DNA damage response helicase, ligase-associated (from data) from Sinorhizobium meliloti 1021

 Score =  243 bits (619), Expect = 8e-68
 Identities = 246/840 (29%), Positives = 377/840 (44%), Gaps = 112/840 (13%)

Query: 42  AGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLN 101
           AG+S LL APTG+GKTL+ FL  L ++ R G    G        +Y+SPLKAL+ DI  N
Sbjct: 47  AGESTLLIAPTGAGKTLAGFLPSLVDITRRGRIPPGAPFTGIHTLYISPLKALAVDIERN 106

Query: 102 LQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGS 161
           L  P       + E GL    ++   RTGDTPQ +R   +   P IL+TTPE L +L+ +
Sbjct: 107 LMKP-------VGEMGLP---VSIENRTGDTPQGKRQRQKLNPPDILLTTPEQLALLLAN 156

Query: 162 ASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQR-PVER 220
                    +  V++DE+H+L  +KRG  L+L L RL+ L  + L+ +GLSAT   P++ 
Sbjct: 157 GEAERFFKDLRYVVLDELHSLVMSKRGHLLSLGLARLRRLAPR-LQTMGLSATVADPMDL 215

Query: 221 ----VAQFLVGSGRPCAIVDIGHARKRDLAI-----EVPPVPLGAVMAI-DVWGLVYDRL 270
               VAQFL        ++ +    K +++I     +VP     A  AI DV+  +    
Sbjct: 216 QRWLVAQFLAKENH-AGLITVSGGAKPEISILRTENQVPWAGHSARYAIPDVYAAI---- 270

Query: 271 ATLAREHRTTLVFVNTRRLAERITRHL----SDRLGKEAVAAHHGSLSKALRLDAEQRLK 326
               +EHRTTL+FVNTR  AE + + L     D L    +A HHGSL  A R   E  + 
Sbjct: 271 ----KEHRTTLLFVNTRSQAEMLFQELWKINDDDL---PIALHHGSLDVAQRRRVEAAMA 323

Query: 327 SGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGVPKGRLFPTS 386
             +L+ +VAT++L+LGID GD+DLV  V +P   +   QR+GRA H++D   +  L P +
Sbjct: 324 ENRLRAVVATSTLDLGIDWGDVDLVVHVGAPKGASRLAQRIGRANHRMDEPSRAILVPAN 383

Query: 387 RDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHEQELLDCLRQATPY 446
           R +++EC A LD    G  D   I +  LDVLAQ I+  A  Q +   EL + +  A PY
Sbjct: 384 RFEVMECQAALDANYVGAQDTPSIGKGALDVLAQHILGMACAQPFDALELYEEVISAAPY 443

Query: 447 AELDQHHYQALLRMLAE-GYNGRQGVRSAYLH--RDAVSGTLRGRRGSQLTALTSGGTIP 503
           A L    ++  + ++A  GY  R   R A +   +D +          Q     + GTI 
Sbjct: 444 ARLAWETFERAVDLVATGGYALRTYERYARIRKTKDGLWRVSNPMVAQQYR--LNVGTIV 501

Query: 504 DNADYAVLLEPQ---------ALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRVR 554
           ++    + +  +          +++G V E F      GD F       R   +      
Sbjct: 502 ESPMLNIRMVKRNQRGSLGRGGMSLGKVEESFLEMLSPGDTFLFSGKVLRFEGIRENECL 561

Query: 555 VEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLAWLQATFEL 614
           V  A    P +P + G     S  L+A V ++ A   ++  L                  
Sbjct: 562 VSQAFSFDPKVPSYAGGKFPLSTYLAAQVRKMLADPARRAGL------------------ 603

Query: 615 DEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAWGLAL 674
                 Q+ D+LA   +V   LP  D L++E  F       ++I++  G   ++  G+ L
Sbjct: 604 ----PDQVRDWLALQGDV-SMLPRDDELLIET-FPRGSRHYMVIYAFEGRLAHQTLGMLL 657

Query: 675 RKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSA-------EPIL---I 724
            +R  R     L   A++ ++ +       + LD++     +R+        E +L   +
Sbjct: 658 TRRLDRAGLKPLGFVATDYSLAV-------WALDDMGAAFRARAPSLGQLFDEDMLGDDL 710

Query: 725 QALLDAPLFGVRWRWNAGVAMAL--PRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLEN 782
           +A L+      R   N  V   L   R  G  K   QI    S DL+  V          
Sbjct: 711 EAWLNESFLLKRTFRNCAVIAGLIEQRHPGREKTGRQI--TVSADLIYDVL--------- 759

Query: 783 IAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAIL 842
                  PDH L+E T +D     +D     ++L+R++     +  R L   SPLA  ++
Sbjct: 760 ---RAHEPDHILLEATRNDAATGLLDIGRLGSMLKRIKG---HITHRRLDQISPLAIPVM 813