Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 811 a.a., DNA damage response helicase, ligase-associated (from data) from Phaeobacter inhibens DSM 17395

 Score =  248 bits (632), Expect = 2e-69
 Identities = 261/885 (29%), Positives = 378/885 (42%), Gaps = 103/885 (11%)

Query: 18  VSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQG 77
           ++ WF     T+   Q +    +    + LL APTG GKT++ FL  L +L      HQG
Sbjct: 8   ITDWFSTRGWTIHPHQQEMLARVD-DPATLLIAPTGGGKTMAGFLPTLADLATGD--HQG 64

Query: 78  ELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKER 137
                   +YVSPLKAL+ DI+ NL+ P+E +   I        RI    RTGDTP   +
Sbjct: 65  -----LHTLYVSPLKALAADIKRNLRTPVEDMGLPI--------RIDD--RTGDTPASRK 109

Query: 138 AAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLER 197
            + R   PHIL+TTPESL +L          A +  V++DEIHALA +KRG  L L L R
Sbjct: 110 RSQRADPPHILLTTPESLALLTSYEDAPRMFAGLKRVVLDEIHALAESKRGDQLMLALTR 169

Query: 198 LQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIV--DIGHARK-RDLAIEVPPVPL 254
           LQA+C   +RR+GLSAT      +AQ+L     PC IV  D G A   R L  +  P   
Sbjct: 170 LQAICPD-MRRVGLSATVDDPAAIAQYLARHPAPCDIVLADPGPAPDIRMLHTDAAPPWA 228

Query: 255 GAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHL----SDRLGKEAVAAHH 310
           G   A  +  ++        + HRTTL+F NTR  AE   R+L     D L    +  HH
Sbjct: 229 GGGAAHAIPAVLEQ-----IKAHRTTLIFHNTRAQAEIFFRNLWLANDDAL---PIGIHH 280

Query: 311 GSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRA 370
           GSL +  R   E  +  G+L+ +V T SL+LGID GD+DLV Q+ +P ++   +QR+GRA
Sbjct: 281 GSLDRVQRDRVEAAMVRGELRAVVCTGSLDLGIDWGDVDLVIQIGAPKNVKRLVQRIGRA 340

Query: 371 GHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQA 430
            H+ +   K  L P +R +++EC A L+ V  G LD       P DVL Q I+  A    
Sbjct: 341 NHRYNAPSKALLVPANRFEVVECRAALEAVEAGTLDGSPRSPGPRDVLCQHILIRACAGP 400

Query: 431 WHEQELLDCLRQATPYAELDQHHYQALLRMLAEG------YNGRQGVRSAYLHRDAVSGT 484
           +   +L   +  A  YA L +  + A L   A G      Y+  Q +    L R      
Sbjct: 401 FAADDLFAEVTGAGAYASLTRAEFDACLDFCATGGYALRVYDQWQRL----LQRPDGLWQ 456

Query: 485 LRGRRGSQLTALTSGGTIPDNADYAVLLEPQ--ALNIGSVNEDFAVESIAGDIFQLGNAS 542
           LR  R ++   +   GTI D     V L+       +G + E FA     GD F +G   
Sbjct: 457 LRDPRAARRIRMNI-GTIQDADLLKVRLKRSRGGKPLGEIEEAFAATLTPGDTFLIGGQV 515

Query: 543 YRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTV 602
            R   +    V V       P +  + G     S +LS  +                D +
Sbjct: 516 VRYESLREMTVEVSRNASKTPKVAVFSGTKFATSTQLSTRIL---------------DIL 560

Query: 603 EVLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPY 662
           +  +W                D+LA  R+V   +P +  L++E  F   G   L ++   
Sbjct: 561 QRDSW--------PDLPSHTADWLALQRQV-SEMPRRGQLLLES-FPFRGREYLCVYGFA 610

Query: 663 GSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPI 722
           G    +  GL L KR        L   A++ A +             +W         P+
Sbjct: 611 GRNAMQTLGLLLTKRMEELSLDPLGFVATDYATL-------------IWGLSPVADPAPL 657

Query: 723 LIQALLDAPLFGVRWRWNAGVAMALPRFVGGRKVAPQIQRM---KSEDLVAAVFPDQIAC 779
                L A L G    W A  A+    F     +A  I+R    + +    A F   I  
Sbjct: 658 FDPDKLRAGLDG----WLADNAVMKRSFRAVANIAGLIERNTPGQRKSGRQATFSSDI-L 712

Query: 780 LENIAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLAS 839
            + +   +  PDH L++ T  + L   +D      +L R+      +    L   SPLA+
Sbjct: 713 YDTL--RKYDPDHLLLDITRQEALGGLVDFGRIEEMLTRING---NITLNRLSQISPLAA 767

Query: 840 AILNARPYAFLDDAPLEERRTQAVLNRRWNDVHSSDDLGALDADA 884
            +L       +   P++    + +L R   D+     L AL+A A
Sbjct: 768 PLL-----LEVGKVPVKGAAQEKLLQRETEDLMRLAGLAALEAPA 807