Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 747 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score = 67.4 bits (163), Expect = 5e-15
 Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 69/341 (20%)

Query: 44  QSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQ 103
           ++ L+  PT SGKTL   +A+L+ +L E     G+       +++ PLKAL+N+      
Sbjct: 32  KNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKG-----LFIVPLKALANE------ 80

Query: 104 APLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSAS 163
              +   +   + G     I   +  GD   KE  +      HI++TT E L  LM    
Sbjct: 81  -KFDEFKEKYEKYG-----IKVGLSIGDFDTKENLSKF----HIIITTSEKLDSLMRHEV 130

Query: 164 GREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERV-- 221
             E +  V   ++DEIH +  N RG  L + L +L+ L     + +GLSAT    E +  
Sbjct: 131 --EWINDVSLAVIDEIHLIGDNDRGGTLEVILTKLKNL---NAQIVGLSATIGNPEELSN 185

Query: 222 ---AQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHR 278
              A+ +V   RP  +    +       ++ P   +  V   ++  L+ D +     E  
Sbjct: 186 WLNAKLIVDEWRPVELKKGIYFENELEFVKSPAKKIKQVSKNNITDLIVDSV----EEKG 241

Query: 279 TTLVFVNTRRLA-------------ERITRHLSDRLG---------------------KE 304
           + L+F N++R A              R  +H  ++L                      K+
Sbjct: 242 SCLIFCNSKRNAVGEAKKHNLTKYLTRTEQHELNKLSEEILSILDTPTETCKALSECIKK 301

Query: 305 AVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDI 345
            +A HH  L+   R   E   ++  ++V+  T +L  G+++
Sbjct: 302 GIAFHHAGLTYQHRKIVEDGFRNRLIKVICCTPTLSAGLNL 342