Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 759 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  102 bits (253), Expect = 2e-25
 Identities = 94/347 (27%), Positives = 161/347 (46%), Gaps = 31/347 (8%)

Query: 33  QAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVSPLK 92
           Q  A   +  G+++LL   T SGKTLS  L +L+ L       Q +  A  L IY  P K
Sbjct: 65  QYSALENVRIGKNILLTTSTASGKTLSFNLPILETL-------QNDKDATALYIY--PTK 115

Query: 93  ALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTP 152
           AL+ND   NL+           E  LN   +   +  GDTP  +R ++R+ +  I++T P
Sbjct: 116 ALTNDQLNNLKN---------LENELNIT-LKPEIYDGDTPNSKRKSIREKS-RIILTNP 164

Query: 153 ESLY-VLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCK---KPLRR 208
             L+ VL  +        ++  +++DE H   G   G++++  + RL+ +C+      + 
Sbjct: 165 HELHQVLQYNPKWMSFFKNLKYIVIDEAHTYRGIF-GSNISFLIRRLRRICEDYGSYPQF 223

Query: 209 IGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDVWGLVYD 268
           I  SAT    +  ++ LVG      ++D   + K              +     +    +
Sbjct: 224 ILASATLANAKEFSEKLVGLD--FRVIDKDGSPKNKKYFVFYNTLKNEISESSWYSSAIN 281

Query: 269 RLATLAREHRTTLVFVNTRRLAERIT----RHLSDRLGKEAVAAHHGSLSKALRLDAEQR 324
            L    +    T+ F  +R++AE IT    + L + +    ++++    +   R D E R
Sbjct: 282 ILELCMKYGLQTIGFTLSRKMAELITIWTKKSLGNNILSRKISSYRSGFTPEERRDIESR 341

Query: 325 LKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAG 371
           LK+G L+ + +T +LE+GIDIG +D V     PG++ +  Q+ GRAG
Sbjct: 342 LKNGDLRAVTSTNALEVGIDIGSLDSVIMYGYPGTLMSLWQQAGRAG 388