Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 106/435 (24%), Positives = 183/435 (42%), Gaps = 55/435 (12%)

Query: 26  FATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLV 85
           + + T  Q QA P I AG+++L AA TG+GKT S  L +L     +  K +   P +   
Sbjct: 21  YQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFA-DAPKIR---PKRVRS 76

Query: 86  IYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAP 145
           I ++P + L+  +  N       I+Q      L A  +   V     PQK+R        
Sbjct: 77  IILTPTRELALQVEQN-------INQYAKYLPLTAMAMYGGVDAA--PQKKRLIE---GV 124

Query: 146 HILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKP 205
            +LV TP  L  +    + R     V  +++DE   +        +   +E+L     + 
Sbjct: 125 DLLVATPGRLLDMYTQRAIR--FDEVSVLVLDEADRMLDMGFIEDINNIIEKLP----EQ 178

Query: 206 LRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDVWGL 265
            + +  SAT   + +  + L  +  P AI +I  +RK             A   ID W  
Sbjct: 179 RQNLLFSAT---LSKQVKALAKTAIPDAI-EIEISRKN-----------AASTQIDQWLT 223

Query: 266 VYDR------LATLAREHR--TTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLSKAL 317
             D+      L+ L +E+     L+F+ T+  A ++   L  R G  A A H G  S+A+
Sbjct: 224 TVDKDRKSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKR-GIVAEAFHSGR-SQAI 281

Query: 318 RLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGV 377
           R       K+G++  LVAT  +  GIDI  ++ V     P     ++ R+GR G    G 
Sbjct: 282 REQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRA--GN 339

Query: 378 PKGRLFPTSRDDLIECVA----LLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHE 433
               +   S+DD     A    L   + +  ++    P+  + +     V ++++++ H+
Sbjct: 340 QGEAISFVSKDDFRNLCAIERRLGHIIERKNIEGFE-PKKAVPISILDFVPKSASRSAHK 398

Query: 434 QELLDCLR-QATPYA 447
                 ++ QA+PY+
Sbjct: 399 PNNTAAVKDQASPYS 413