Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 807 a.a., DNA damage response helicase, ligase-associated (from data) from Dinoroseobacter shibae DFL-12

 Score =  251 bits (640), Expect = 3e-70
 Identities = 216/646 (33%), Positives = 293/646 (45%), Gaps = 67/646 (10%)

Query: 45  SMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTL-VIYVSPLKALSNDIRLNLQ 103
           ++LL APTG GKTL+ FL  L EL        G  P   L  +Y+SPLKAL+ DI+ NL+
Sbjct: 39  ALLLIAPTGGGKTLAGFLPTLAEL--------GPAPPPGLHTLYISPLKALAADIKRNLR 90

Query: 104 APLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSAS 163
            P+E    AI  +           RTGDT Q +R   R   PHIL+TTPESL +++    
Sbjct: 91  RPIEEAGLAIRVED----------RTGDTSQTQRKRQRADPPHILLTTPESLALMLSYED 140

Query: 164 GREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQ 223
                A V  VIVDEIHALA +KRG  L L L RLQ+L    LRR+GLSAT      +A+
Sbjct: 141 AARTFAGVQRVIVDEIHALAESKRGDQLMLGLARLQSLVPG-LRRVGLSATVEDPPAIAR 199

Query: 224 FLVGSGRPCAIVDIGHARKRDLAI----EVPPVPLGAVMAIDVWGLVYDRLATLAREHRT 279
           FL     PC I+        D+ +    E PP   G              +    + H+T
Sbjct: 200 FLARHPDPCDILLADPGPAPDITMLQTDEAPPWSGGGGR------YAIPAILQAVKAHKT 253

Query: 280 TLVFVNTRRLAERITRHL----SDRLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVA 335
           TL+F NTR  AE     L     D L    +  HHGSLS+  R   E  +  G L+ +V 
Sbjct: 254 TLIFHNTRAQAELFFHALWLANEDAL---PIGIHHGSLSREQRQRVEAAMAEGALRAIVC 310

Query: 336 TASLELGIDIGDIDLVCQVASPGSIAAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVA 395
           T SL+LGID GD+DLV QV +P ++   +QR+GRA H+ +   K  L P +R +++EC A
Sbjct: 311 TGSLDLGIDWGDVDLVIQVGAPKNVKRLVQRIGRANHRYNAPSKALLVPANRFEVVECHA 370

Query: 396 LLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQ 455
            L  +  G+LD       P DVL Q I+A A+   +    L   +  A  Y +L +  + 
Sbjct: 371 ALKTMADGKLDGEPRAEGPRDVLCQHILAVAAAGPFDADALFAEVTSAGAYRDLTRPAFD 430

Query: 456 ALLRMLAE-GYNGRQGVR-SAYLHRDAVSGTLRGRRGSQLTALTSGGTIPDNADYAVLLE 513
             L   A  GY  R   R    LHR      LR  R ++   +   GTI D     V L+
Sbjct: 431 DCLEFCATGGYALRAYDRWQRLLHRPDGMWQLRDPRAARQIRMNI-GTIIDTETLKVRLK 489

Query: 514 PQ--ALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRVRVEDAHGLPPTIPFWLGE 571
            +     +G V E FA     GD F +G    R   +    V V       P I  ++G 
Sbjct: 490 NRRGGTPLGEVEEGFAATLTPGDTFLIGGQIVRYEGLNELTVEVTRRADKQPKIATFMGT 549

Query: 572 APGRSDELSAAVARLQARIDQQLALAGGDTVEVLAWLQATFELDEACAGQLLDYLARTRE 631
               S +LS  +  +  + D                     EL  A      ++L   R+
Sbjct: 550 KFATSTQLSHTILEMFRQPDWP-------------------ELPSATC----EWLHLQRK 586

Query: 632 VLGALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAWGLALRKR 677
           V   LP  D ++ME F  E     L+ +   G    +  GL L +R
Sbjct: 587 V-SKLPEADRMLMETFGHED-RQYLVCYGFAGRNAQQTLGLLLSQR 630