Pairwise Alignments

Query, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

Subject, 644 a.a., general secretion pathway protein D from Pseudomonas stutzeri RCH2

 Score =  329 bits (843), Expect = 2e-94
 Identities = 218/592 (36%), Positives = 322/592 (54%), Gaps = 94/592 (15%)

Query: 33  YEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTVRTVDLHDADAIYDIFLAQLRAQG 92
           + +N  D ++  FID +S+++G TFIVDPRVKG+V+V +        +Y +FL+ +   G
Sbjct: 41  WTINLKDADIRAFIDQISQLSGQTFIVDPRVKGQVSVVSNATLSLSEVYQLFLSVMATHG 100

Query: 93  YATVDLPNGSV-KIVPDQAARLEPVPVEAGGQQGEGSDSVATRVFSVRNAASEQVLGILK 151
           ++   L  G V ++VP+  A+      EAGG    G D + TRV  V++ ++ +++ +++
Sbjct: 101 FSV--LTQGDVARVVPNAEAK-----AEAGGGPS-GGDQLETRVIQVQHTSAAELIPLIR 152

Query: 152 PLIDPRVGVITPYPAAHQLVVTDWRSNLERIASLLRQLDRPQEVPGSGSTQVIYLRHANA 211
           PL+ P+ G +    +A+ L+++D  +N+ RI +L+RQLDR +    S    V+ L+H  A
Sbjct: 153 PLV-PQFGHLAAVSSANALIISDRSANIARIQNLVRQLDRAE----SNDYGVLNLQHGWA 207

Query: 212 GEVVKVLRGLSQEGAVPVE-----------------GAGEAEGK--------DRPVVPAA 246
            ++ +VLR     G                      G  EA GK        D P   +A
Sbjct: 208 VDIAEVLRNSLMRGEAKTTAGVQIIADSRTNRLIFIGPSEARGKLASLAQTLDTPTTRSA 267

Query: 247 GGSGIRLEY-------------------------------------EEGTNAVVMVGPDS 269
               IRL +                                     +E  NA+V++    
Sbjct: 268 NTRVIRLRHNDAKSLAETLGDISEGLKNPESGEATTTRPQNILIRADESLNALVLLADPE 327

Query: 270 ELAAYRAIVEQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLF--ADEKFGAGIVNFGSNG 327
            +    +IV QLD+ RAQV+VEA I EVS      LGVQW       + GAG VNFG+ G
Sbjct: 328 LIGTMESIVRQLDVPRAQVMVEAAIVEVSGDITDALGVQWAVDARGSRGGAGGVNFGNTG 387

Query: 328 VNIASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTP 387
           +++ S+  A    +NE   +L     GA  GIG      +F  L+ AL   S  NLLSTP
Sbjct: 388 ISVGSVLNAI--NENEIPDNL---PDGAIIGIGTR----SFGALITALSSNSKSNLLSTP 438

Query: 388 TLLTLDNAEASILVGQEVPFVTGSVTQNNA---NPYQTIERKEVGVKLRIKPQINIDNSV 444
           +LLTLDN EA ILVGQ VPF TGS T + A   NP+ TIER+++GV L++ P IN   ++
Sbjct: 439 SLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPHINEGATL 498

Query: 445 RLDIVQEVSSIADTSS----ASDVITNKREIKTKVMVEDNGLVILGGLISDELSTSDQRV 500
           RL I QE+SSIA ++S    A D++TNKR IK+ ++ ED  +++LGGLI D+++ ++ +V
Sbjct: 499 RLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDVTRTNAKV 558

Query: 501 PLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILRDGPSLAGLSEDKYRTLQ 552
           PLLGDIP LG LFRS    + K+NLMVF+RP ++RD   LA LS  KY  ++
Sbjct: 559 PLLGDIPLLGALFRSTQETHIKRNLMVFLRPTVIRDRAGLAALSGKKYSDIR 610