Pairwise Alignments

Query, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  312 bits (800), Expect = 2e-89
 Identities = 208/627 (33%), Positives = 334/627 (53%), Gaps = 101/627 (16%)

Query: 33  YEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTVRTVDLHDADAIYDIFLAQLRAQG 92
           +  +F  T++ EFI+ V R    T IVDP V+GKV VR+ D  + +  Y  FL+ L   G
Sbjct: 27  FSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYG 86

Query: 93  YATVDLPNGSVKIVPDQAARLEPVPVEAGGQQGEGSDSVATRVFSVRNAASEQVLGILKP 152
           +A V++ NG +K++  + A+   +PV +G ++  G D V T+V +V+N +  ++  +L+ 
Sbjct: 87  FAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANG-DEVITQVVAVKNVSVRELSPLLRQ 145

Query: 153 LID-PRVGVITPYPAAHQLVVTDWRSNLERIASLLRQLDRPQEVPGSGSTQVIYLRHANA 211
           LID    G +  Y  A+ +++T   + + R+A ++R++D+     G    +V+ L +A+A
Sbjct: 146 LIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQ----AGDKEIEVVELNNASA 201

Query: 212 GEVVKVLRGLSQ--------EGAVPVEGAGE----------------------------- 234
            E+V+++  L++        E   P   A E                             
Sbjct: 202 AEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMA 261

Query: 235 AEGKDRPV----------VPAAGGSGIRLEYEEGT-------------------NAVVMV 265
           A+G +R V          V    G    L+ E+GT                   N++V+ 
Sbjct: 262 AKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLT 321

Query: 266 GPDSELAAYRAIVEQLDIRRAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGS 325
            P   + A   ++ QLDIRRAQV++EA+I E+++     LGVQW   +      ++ +G+
Sbjct: 322 APQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLE---SGSVIQYGN 378

Query: 326 NGVNIASI------------AGAAASGDNEALGDLLSTTTG-----ATAGIGHFGGGFNF 368
            G +I ++              A    +N  L +  +TT G     A+A     G   + 
Sbjct: 379 TGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSI 438

Query: 369 AM-----LVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVT-QNNANPYQT 422
           AM     L+NA+   S  N+LS+P++  +DN EAS +VG+EVP +TGS    NN NP+QT
Sbjct: 439 AMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQT 498

Query: 423 IERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADTSSASDVITNKREIKTKVMVEDNGL 482
           ++RKEVG+KL++ PQIN  NSV+L+I QEVS++   + A DV   KR++ T VMV+D  +
Sbjct: 499 VDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQM 558

Query: 483 VILGGLISDELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILRDGPSLAG 542
           ++LGGLI +    S+ +VPLLGDIP LG+LFRS +++  K+NLMVFI+P I+RDG +  G
Sbjct: 559 LVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADG 618

Query: 543 LSEDKYRTLQQTTPLQLPDLAEGTRLL 569
           +++ KY  ++     QL    +G RLL
Sbjct: 619 ITQRKYNYIRAE---QLFRAEKGLRLL 642