Pairwise Alignments

Query, 241 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

Subject, 239 a.a., two component transcriptional regulator, winged helix family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  189 bits (481), Expect = 3e-53
 Identities = 105/234 (44%), Positives = 142/234 (60%), Gaps = 3/234 (1%)

Query: 8   ILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGFSL 67
           IL+VDD ++IRE L  YL + GF+    A     R  L      LV+LD+M+P EDG SL
Sbjct: 9   ILIVDDARDIREPLAQYLRKQGFRTRLAAHAAEAREVLAEATIHLVVLDIMMPGEDGLSL 68

Query: 68  CRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRTE 127
           CRW+  H      P+++LTA +DE DR++GLELGADDYL KPF+PREL AR++A+LRR  
Sbjct: 69  CRWLVAHDGP---PVLLLTAMADETDRIVGLELGADDYLVKPFNPRELLARVRAILRRAP 125

Query: 128 FGQTAPGNAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQILDRDTIG 187
               AP +A   F  W  D  +  + H DG    L+ A+  LL +FLD P+ +L R T+ 
Sbjct: 126 PEIAAPPSARRGFAGWVHDPDALTVAHADGRCAELTSAENRLLGIFLDQPRTVLSRATLL 185

Query: 188 NATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLAAHVCCAP 241
           + + GRE    DR +D  VSRLR+++    K P+++ T  G GY LAA V  AP
Sbjct: 186 DLSAGREAKAYDRAIDNQVSRLRRKIEADPKHPQILVTEWGGGYRLAADVEGAP 239