Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 191 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Pseudomonas fluorescens FW300-N2E2

 Score = 79.0 bits (193), Expect = 4e-20
 Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 4/148 (2%)

Query: 21  LQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALDHLRARRVQARML 80
           L+R +G+   A D+L ETYLRV R +  + I     ++++ A N+A D    R+  AR+L
Sbjct: 34  LRRRLGSEELANDVLHETYLRVDRMVDTQEIAQPNAYLYRMALNIAADR---RQADARLL 90

Query: 81  VDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGATYLEI 140
             D  +E+L  V+  A         ++ L+ L  +L +L  R++RIFI +RL  A +LEI
Sbjct: 91  TGDEIEELLQ-VSDEALDPARVVGGQKELQTLLKALYELPARRRRIFIAARLEEAPHLEI 149

Query: 141 AEQLSVSPSTVQKELKLIMAICMGVAER 168
           +++  +S   V+KE+K  +  C    ER
Sbjct: 150 SQRFGISTRMVEKEIKAALGHCALRLER 177