Pairwise Alignments

Query, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

Subject, 187 a.a., Sigma-70 region 2 from Pseudomonas syringae pv. syringae B728a

 Score =  223 bits (569), Expect = 1e-63
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query: 1   MSQSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQ 60
           +S S FN+VFL QR  LLRTLQRMVGN STAEDLLQET+LRVSRAL E P+ H+EPFVFQ
Sbjct: 16  VSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRALTEHPVAHLEPFVFQ 75

Query: 61  TARNLALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLS 120
           TARNLALDHLRARR+  R +++DV    L +V A   S EDAAHA++LL++LS SL+ LS
Sbjct: 76  TARNLALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHAKRLLENLSASLSTLS 135

Query: 121 ERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICMGVAERL 169
            RQQ+IF LSRL G +YLEIAEQL VS STVQKELKLIMAIC+GV  RL
Sbjct: 136 PRQQKIFTLSRLDGRSYLEIAEQLQVSASTVQKELKLIMAICIGVLSRL 184