Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  225 bits (574), Expect = 2e-63
 Identities = 133/325 (40%), Positives = 195/325 (60%), Gaps = 25/325 (7%)

Query: 193 LLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHAVSSRHAAPFLALNCAA 252
           ++G    ++ L  +  +VA  D+ +L+ GE+GTGKELVARA H +S R  AP +++NCAA
Sbjct: 144 IIGHCAPMQDLFGKIRKVAPTDSNVLIQGESGTGKELVARALHNLSRRAKAPMISVNCAA 203

Query: 253 LPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQAKLLRFLSD 312
           +PE+L ESELFG+  GAFTGA   G+ GL+E A+ GT+FLDEIGE+    QA+LLR L +
Sbjct: 204 IPETLIESELFGHEKGAFTGAS-AGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQE 262

Query: 313 GSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVLNLEVPPLRDRGQDI 372
           G  RRVG  +  KVDVR+I+ATHRDL+ +   G FREDL+YRL+V+ L++PPLR+RG D+
Sbjct: 263 GEIRRVGSVQSQKVDVRLIAATHRDLKTLAKTGQFREDLYYRLHVIALKLPPLRERGSDV 322

Query: 373 LMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVIFRAAAICE------ 426
           L +A  F+ +   ++       +     A+    WPGNVR+L+N I RAA + E      
Sbjct: 323 LEIAKAFLARQGERMGSDDLHFSRDAEQAIRHYSWPGNVRELENAIERAAILSESPEIDA 382

Query: 427 ---GNLVDIGDLD---------IAGTSVARGQDGEVASLEQAVGDFERELLQRLYASYPS 474
              G  +++ +LD         I G + +  +  E  SLE     F  E     +  + +
Sbjct: 383 ELLGIDIELDELDDDFDEPLGSIRGIANS-NEPTEDLSLEDYFQHFVLE-----HQDHMT 436

Query: 475 TRQLAGRLQTSHTAIAQRLRKYGIP 499
             +LA +L  S   + +R ++ GIP
Sbjct: 437 ETELARKLGISRKCLWERRQRLGIP 461