Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 505 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

 Score =  232 bits (592), Expect = 2e-65
 Identities = 124/241 (51%), Positives = 159/241 (65%), Gaps = 2/241 (0%)

Query: 187 AEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHAVSSRHAAPFL 246
           A G+  L+G+SP +R +     +V      +L+ GETGTGKELVARA H    R + PF+
Sbjct: 194 ASGY-GLIGDSPRMRAVYQLIGKVLHSPVNVLLTGETGTGKELVARAIHDCGFRRSKPFV 252

Query: 247 ALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQAKL 306
             NCA+LPE L ESELFGY  GAFTGA R  + GL++ AN GT+FLDEIG+M   LQAKL
Sbjct: 253 VQNCASLPEQLLESELFGYRKGAFTGADRD-RSGLLDAANGGTLFLDEIGDMPLLLQAKL 311

Query: 307 LRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVLNLEVPPLR 366
           LR L +G  R +G     KVDVRI++ATHRDL   V  G FREDLFYRL+   +E+PPLR
Sbjct: 312 LRVLQEGEVRPLGSTETHKVDVRIVAATHRDLRSQVENGLFREDLFYRLSHFPIELPPLR 371

Query: 367 DRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVIFRAAAICE 426
           +R +DIL LA  F  +AC  +QR  CR + +    L    +PGNVR+L+ ++ RA  +CE
Sbjct: 372 ERDEDILRLARHFADKACAFLQRDLCRWSDAALERLAGYAFPGNVRELKGLVERAVLLCE 431

Query: 427 G 427
           G
Sbjct: 432 G 432