Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

 Score =  337 bits (865), Expect = 5e-97
 Identities = 199/516 (38%), Positives = 307/516 (59%), Gaps = 24/516 (4%)

Query: 1   MRIHVSFIDRVGITQEVLALLGARNLNLDAVEM-VPPNVYIDAPTLSPAVLEELHDALFE 59
           MR+ V   DR+G+T+E+L +L +++++L  +E+ V   +Y++ P +      EL   +  
Sbjct: 1   MRLEVLCEDRLGLTRELLDILASKSIDLRGIEIDVIGIIYLNCPDIDFETFSELMAEIRR 60

Query: 60  VHGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIELCGRESA-- 117
           + GV+ V  +  +P +R + +L +LL  + D VLA++  G V +AN A   L  RE +  
Sbjct: 61  IPGVKDVRKIQFMPIERHNTELISLLNNLPDAVLAINLKGAVDMANHAAAALFNREESSM 120

Query: 118 -GRSVGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAMPI---------TNAGGLL 167
            G+ +  L       + L  +   L   ++ L+G   +++ MP+         T A  ++
Sbjct: 121 IGQQISALMPVFNFTRWLEGSKSRL-REDVVLDGLDYVMEIMPVYISSDAKQSTLASAMM 179

Query: 168 TLYPPSRMGERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGK 227
            L   +      + +      GF+  +G S   ++L ++A ++A LD PLL+ GETGTGK
Sbjct: 180 MLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGK 239

Query: 228 ELVARACHAVSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQ 287
           E++A+ACH  S R +APFL L+CA++P+ +AE+ELFG+APG+F   Q  G  G+ E AN 
Sbjct: 240 EMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFNHQQ--GHKGIFEQANG 297

Query: 288 GTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSF 347
           GTVFLDEIGEMSP+LQ KLLRFL DG+FRRVG + E+ VDVR+I++T  +L  +     F
Sbjct: 298 GTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESRRF 357

Query: 348 REDLFYRLNVLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPW 407
           REDLFYRLNVL L +PPLR+R  D+  L   F+ + C ++     +LT      L    W
Sbjct: 358 REDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQYQW 417

Query: 408 PGNVRQLQNVIFRAAAICEGNLVDI-----GDLDIAGTSVARGQDGEVASLEQAVGDFER 462
           PGN+RQL N++ RA    EG+++ I       +D   ++ +   DG   SL+  + ++E 
Sbjct: 418 PGNMRQLDNMVLRALTEIEGDVLGIEPFHLPQVDSVSSAPSINLDG---SLDDIMKEYES 474

Query: 463 ELLQRLYASYPSTRQLAGRLQTSHTAIAQRLRKYGI 498
           ++L RL+ S+PS+R+LA RL  SHT+IA +LR YGI
Sbjct: 475 QVLDRLFQSFPSSRKLAKRLNVSHTSIANKLRDYGI 510