Pairwise Alignments

Query, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

Subject, 524 a.a., nif-specific transcriptional activator NifA from Klebsiella michiganensis M5al

 Score =  229 bits (585), Expect = 1e-64
 Identities = 126/255 (49%), Positives = 167/255 (65%), Gaps = 2/255 (0%)

Query: 177 ERLSALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHA 236
           ER  A       G + ++G+SPA+R +     +V+  D  +LV GE+GTGKEL+A A H 
Sbjct: 196 ERPRACTPSRGFGLENMVGKSPAMRQIMDIIRQVSRWDTTVLVRGESGTGKELIANAIHH 255

Query: 237 VSSRHAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIG 296
            S R AA F+  NCAALP++L ESELFG+  GAFTGA R  K G  ELA+ GT+FLDEIG
Sbjct: 256 NSPRAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRK-GRFELADGGTLFLDEIG 314

Query: 297 EMSPYLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLN 356
           E S   QAKLLR L +G   RVGGD  ++V+VRII+AT+R LE  V  G FREDL+YRLN
Sbjct: 315 ESSASFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLN 374

Query: 357 VLNLEVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQN 416
           V+ + +PPLR+R +DI  LAHF +++     Q    R++      L+   WPGNVR+L+N
Sbjct: 375 VMPIALPPLRERQEDIAELAHFLVRK-IAHSQGRTLRISDGAIRLLMEYSWPGNVRELEN 433

Query: 417 VIFRAAAICEGNLVD 431
            + R+A + E  L+D
Sbjct: 434 CLERSAVLSESGLID 448