Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 193 a.a., RNA polymerase sigma-H factor AlgT from Pseudomonas fluorescens FW300-N2E2

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GD+ A+ D L     H    L  R      E +D+ Q+  +  + A   ++       W+
Sbjct: 17  GDKRAF-DLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWL 75

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQLF----AVSEVESAEAS--RD-----LTKL 119
             IA     ++L S  RR    DV  +DA+ +     + ++ES E +  RD     + + 
Sbjct: 76  YRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALLRDEIEGTVHRT 135

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           ++QLPE  R  +   + +GLS E+ A +       V+  I R  +A+ + +
Sbjct: 136 IQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186