Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 186 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N1B4

 Score = 48.5 bits (114), Expect = 7e-11
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 13/151 (8%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           +R F  S L+R P+  +D+VQ  L    ++    +P+  L AW+ +I   +  D  R  S
Sbjct: 33  LRRFAAS-LTRNPSSADDLVQACLERALSSWGAKRPEGDLRAWLFSILYRQFLDAHRR-S 90

Query: 87  RRDARHDVLD-----DDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSV 141
           RR AR  +L+     DDAQ       E    ++   +   QL   QR  ++ V +EGLS 
Sbjct: 91  RRYAR--MLEFFTGRDDAQ----PSAERTVIAQSTLQAFDQLSTEQRALLLWVSVEGLSY 144

Query: 142 EETAQLTGLSSSAVKVGIHRGLKALSRLIGG 172
           +E A++  + +  V   + R  +AL +L  G
Sbjct: 145 KEVAEILDVPTGTVMSRLSRARQALRQLSDG 175