Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQ 63
           L+ Q + GD+ A+   +      V  F+R RL     E  D+ Q+  +  + A   ++P+
Sbjct: 8   LIQQAVRGDRQAFGALVRAHQARVFHFIR-RLLGSTDEAADLTQETFIRAYQALPRWRPE 66

Query: 64  QPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAV----SEVESAEASRDLT-- 117
             L  W+  IAR    D LR    +  RH VL  D Q   +    S +   +++RDL   
Sbjct: 67  ARLQTWLLQIARNAALDLLR----QRQRHVVLAADEQAEPIDPAPSPLRRLQSARDLEML 122

Query: 118 -KLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL 166
            +LL +LP  QR  ++  ++EGLS +E A    L++  VK  + R  +AL
Sbjct: 123 ERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172