Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GD+ A+ D L     H    L  R      E +D+ Q+  +  + A   ++       W+
Sbjct: 17  GDKRAF-DLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYRALANFRGDSAFYTWL 75

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQLF----AVSEVESAEAS--RD-----LTKL 119
             IA     +HL +  RR    DV  +DA+ +    A+ ++ES E S  RD     + + 
Sbjct: 76  YRIAINTAKNHLVARGRRPPDSDVSSEDAEFYEGDHALKDIESPERSLLRDEIEDTVHRT 135

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           ++ LPE  R  +   + +GLS E+ A +       V+  I R  +A+ + +
Sbjct: 136 IQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186