Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 189 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  211 bits (536), Expect = 8e-60
 Identities = 113/172 (65%), Positives = 136/172 (79%), Gaps = 1/172 (0%)

Query: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTY 60
           ++ALLL+GL GD  AY+ FL  L  H+R FLR RLS+  +E+ED++Q+VLLAVHNAR TY
Sbjct: 17  LRALLLRGLDGDARAYRAFLDQLGGHLRGFLRRRLSQS-SELEDVLQEVLLAVHNARQTY 75

Query: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLL 120
           + +QPLT WVQAI RYKLADH R+  R+ A+ D LD+  +L AV +   AEA RDL KLL
Sbjct: 76  RAEQPLTVWVQAICRYKLADHYRARGRQAAQMDWLDEADELLAVQDNAQAEACRDLGKLL 135

Query: 121 KQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGG 172
           +QLP RQRLPIVHVKLEG SVEETA+LTGLSSSA+KVGIHRGLKAL+  I G
Sbjct: 136 EQLPPRQRLPIVHVKLEGRSVEETARLTGLSSSAIKVGIHRGLKALAAKIRG 187