Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 187 a.a., RNA polymerase sigma-70 factor from Xanthomonas campestris pv. campestris strain 8004

 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 34  RLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPL-TAWVQAIARYKLADHLRSVSRRDARH 92
           R+  + AE E+++QDV   + +    + P +     W+  IAR K  DHLR+ + +  R+
Sbjct: 44  RMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARGLTWLAMIARNKAIDHLRATAPQ-RRN 102

Query: 93  DVLDDDAQLFAV--SEVESAE---ASRDLTKLLKQL-PERQRLPIVHVKLEGLSVEETAQ 146
             LDD  +L +   S +E AE     R +   L +L P R  L I     EG++ EE A+
Sbjct: 103 VALDDAGELRSADASPLERAERLTTRRRIDHCLAELEPPRSEL-IRTAFFEGITYEELAE 161

Query: 147 LTGLSSSAVKVGIHRGLKAL 166
            T      VK  I RGL  L
Sbjct: 162 RTDTPIGTVKSWIRRGLAKL 181