Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 48.5 bits (114), Expect = 7e-11
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 31  LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA 90
           L SR      ++ D+ Q+  +  + A  T++ +     W+  IA     +H+ + SRR  
Sbjct: 36  LISRYVSNSGDVADVAQEAFIKAYRAIPTFRGESAFYTWLYRIAVNTAKNHIVAQSRRPP 95

Query: 91  RHDVLDDDAQLF-------AVSEVESAEASRDLTK----LLKQLPERQRLPIVHVKLEGL 139
             DV  ++A+ +        +S  E+   S++L K     +  LP+  +  +   +L+GL
Sbjct: 96  ASDVDAEEAEFYEGGDALKELSNPENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGL 155

Query: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           S EE A++       V+  I R  +A+ + I
Sbjct: 156 SYEEIAEVMDCPVGTVRSRIFRAREAVEKKI 186