Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 167 a.a., RNA polymerase sigma factor, ECF subfamily from Pseudomonas syringae pv. syringae B728a

 Score = 48.1 bits (113), Expect = 8e-11
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 29  AFLRSRLSRR---PAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSV 85
           A+L + L RR   P    D+ QD  + V  AR T Q  +P  A++  IA+  L +H R  
Sbjct: 21  AWLTTWLRRRLGCPHSAADLAQDTFIKVLGARDTAQIVEP-RAFLTTIAKRVLCNHYRRQ 79

Query: 86  SRRDARHDVLDDDAQLFAVSEVESA---EASRDLTKLLKQLPERQRLPIVHVKLEGLSVE 142
               A +  L +  +  A SE E A   E   +L +LL  LP   +   +  +++GLS  
Sbjct: 80  DLEHAYYQALAELPERVAPSEEERAIILETLVELDQLLDGLPALVKRAFLLSQVDGLSHG 139

Query: 143 ETAQLTGLSSSAVKVGIHR 161
             A   G+S + VK  +H+
Sbjct: 140 RIAAELGISIATVKRHLHK 158