Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 223 a.a., sigma-70 family RNA polymerase sigma factor from Synechocystis sp000284455 PCC 6803

 Score = 48.1 bits (113), Expect = 1e-10
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 12  DQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQ 71
           D  A+ + L     HV   L   L+    +  D+ Q+V + V+   H          W+ 
Sbjct: 47  DSTAFNELLRRYQSHVDKILY-HLAPDWQDRADLAQEVWIRVYRNIHRLNEPVKFKGWLS 105

Query: 72  AIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVE---------------SAEASRDL 116
            IA     D LR   R+   H +  D  +     E++               +AE    L
Sbjct: 106 RIATNLFYDELRK--RKRVSHPISLDAPRRMDDGEIDWDIESDYPSPDETLSTAEFYECL 163

Query: 117 TKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
              +K LPE  R  I+  +++GL+ EE A++TG+S   VK  I R    L   +
Sbjct: 164 RSAIKDLPEAFRTTIILREIDGLAYEEIAEITGVSLGTVKSRIARARAKLQTFL 217