Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 218 a.a., RNA polymerase sigma factor RpoE from Synechococcus elongatus PCC 7942

 Score = 52.8 bits (125), Expect = 4e-12
 Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 14/182 (7%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQ 63
           L  Q    D+LA+ + +     HV   +   L+    +  D+VQ+V + V+      Q  
Sbjct: 33  LRCQKQPSDRLAFTELVRRYQNHVERLIY-HLAPDWEDRADLVQEVWIRVYRNLKNLQEP 91

Query: 64  QPLTAWVQAIARYKLADHLRSVSRRDAR----------HDVLDDDA---QLFAVSEVESA 110
           +    W+  I      D LR   RR             +D LD +    Q     E+E  
Sbjct: 92  RSFKGWLSRIVTNLFYDELRRRKRRQPALSLDAPRLIGNDQLDWELPTEQAGPDEELEKQ 151

Query: 111 EASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           E   +L + +  LPE  R  IV  ++EGL+ EE A  TG+S   VK  I R  + L   +
Sbjct: 152 EFYNELRRAIAGLPESFRTTIVLREIEGLAYEEIAAATGVSLGTVKSRIARARQRLQDQL 211

Query: 171 GG 172
            G
Sbjct: 212 SG 213