Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 99.4 bits (246), Expect = 3e-26
 Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTY 60
           +  LL   L G++ AY +FL + A  VR + R R++    + ED+VQ+ LLAVH  RHT+
Sbjct: 9   LAGLLRTALGGNEKAYSEFLQSAAALVRIWARRRVASVGLDPEDIVQETLLAVHLKRHTW 68

Query: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRD--LTK 118
           +   P+  W+ AIAR+KL D L    RR  RH  +   +++      E AE +RD  + +
Sbjct: 69  RTGGPVKPWLFAIARHKLVDAL----RRHGRHSRV-QLSEIEGNLATEEAETARDWEIGR 123

Query: 119 LLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIG 171
            L+ L   QR  +  + +EG ++ E A+   ++ +AV+V +HRGL A++R  G
Sbjct: 124 ALEVLTPGQRSVVTAISVEGRTIAEAARSLDMNETAVRVALHRGLAAIARRFG 176