Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 208 a.a., RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 58.2 bits (139), Expect = 9e-14
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 17  QDFLGTLALHVRAFLR--SRLSRRPAEIEDMVQDVLLAVHNARHTYQPQ-QPLTAWVQAI 73
           Q F   +A H+   +R   R+ R PAE +D+ Q+  L V N   ++ P+    + W+   
Sbjct: 42  QAFRVLMARHMPRAIRLAQRIVRDPAEADDIGQEAFLRVWNKASSFDPKIARFSTWL--- 98

Query: 74  ARYKLADHLRSVSRRDARHDVLDDDAQLFA-----VSEVESAEASRDLTKLLKQLPERQR 128
             Y++  +L     R  RH  ++D A++ +     V  + +A+  R L   L +LPERQR
Sbjct: 99  --YRIVLNLSFDRTRKPRHAPIEDAAEVPSADPAPVEALITAQQQRLLEAALAELPERQR 156

Query: 129 LPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
             I    +EGLS EE A+   LS  A +  + R    L + +
Sbjct: 157 GAIALFHMEGLSGEEAARAMNLSPKAFESLLGRARLTLKKAV 198