Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 181 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 48.1 bits (113), Expect = 8e-11
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           +RAF  S LS      +D+VQ+ LL       ++QP   L AW+  I R     +L    
Sbjct: 18  LRAFAIS-LSGNADRADDLVQETLLRALANIDSFQPGSNLPAWLFTILR-----NLFRSD 71

Query: 87  RRDARHDVLDDDAQLFAVSEVESAEAS----RDLTKLLKQLPERQRLPIVHVKLEGLSVE 142
            R  R +V D D       + +  + +     +    L +LP+ QR  ++ V   G S E
Sbjct: 72  YRKRRREVEDADGSYAKTLKSQPGQTAHLEFEEFRAALDKLPQDQREALILVGASGFSYE 131

Query: 143 ETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           + A + G +   +K  ++R    LS L+
Sbjct: 132 DAAAICGCAVGTIKSRVNRARSKLSALL 159