Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 189 a.a., sigma-70 family RNA polymerase sigma factor from Rhodopseudomonas palustris CGA009

 Score = 54.7 bits (130), Expect = 9e-13
 Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 21/174 (12%)

Query: 11  GDQLAYQDFLGTLALHVRAF-LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAW 69
           GD++A Q   G    HV+ F    RL R     ED++ +V L V      ++ +  ++ W
Sbjct: 19  GDRVAMQVLYGRH--HVKVFRFGLRLVRNEQIAEDLISEVFLDVWRQAGKFEGRSSVSTW 76

Query: 70  VQAIARYKLADHLRSVSRRDARHDVLDDDAQL----------FAVSEVESAEASRDLTKL 119
           + AI R+K    LR   R+DA    LDD+A             AV + ++ EA   L K 
Sbjct: 77  LLAITRFKALSALR--RRKDAE---LDDEAAAAIEDPSDDPEIAVQKKDTGEA---LRKC 128

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173
           L  L    R  +  V     S+EE A++ G+  + VK  +    K L+ L+  A
Sbjct: 129 LSSLTPEHREIVDLVYYHEKSIEEVAEIVGIPENTVKTRLFYARKKLADLLQAA 182