Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 3   ALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQP 62
           ALL++   GD  A       L           L  R AE ED+ Q+ ++ +      ++P
Sbjct: 38  ALLIRFAAGDPEAAAVLTARLVPRALGVALRVLGNR-AEAEDITQEAMVRLWRQAEHWEP 96

Query: 63  QQP-LTAWVQAIARYKLADHLRSVSRRDARHDVLDD--DAQLFAVSEVESAEASRDLTKL 119
            +  L+ W+  +      DH R +       D + D  D    A  +++       L   
Sbjct: 97  GRARLSTWLYRVVMNLCIDHKRRLRGGHVDLDAIPDPPDPAKSAAEQMQDGARQDALQDA 156

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGG 172
           L QLPERQR  +V   +E L+  E A +  +S  AV+    RG +AL+ ++ G
Sbjct: 157 LMQLPERQRQAVVLRHIEDLANPEIAGIMDISVEAVESLTARGKRALAAILAG 209