Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 181 a.a., RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 51.6 bits (122), Expect = 8e-12
 Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 20/160 (12%)

Query: 18  DFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIAR-- 75
           D LG +    RAF  S L+R  A  +D+VQD L+        ++    + AW+  I R  
Sbjct: 10  DHLGAM----RAFAIS-LTRNTAMADDLVQDTLVKAWTNIEKFEEGSNMRAWLFTILRNT 64

Query: 76  -YKLADHLRSVSRRDARHDVLDDDA----QLFAVSEVESAEASRDLTKLLKQLPERQRLP 130
            Y L        RR  R +V D D     QL    + +     RD      QL + QR  
Sbjct: 65  YYSL--------RRKRRREVEDADGVLSEQLSQKPDHDGRLNMRDFNTAFAQLNDEQREA 116

Query: 131 IVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           +V V   G S EE A+  G+    +K  ++RG   L+ L+
Sbjct: 117 LVLVGAGGFSYEEAAETCGVKVGTIKSRVNRGRARLAELM 156