Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella loihica PV-4

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 11/149 (7%)

Query: 31  LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA 90
           L +R  R  A++ D+ Q+  +  + A   ++ +     W+  IA     +HL +  RR  
Sbjct: 36  LIARYVRNQADVADVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAKNHLVAQGRRAP 95

Query: 91  RHDVLDDDAQLF----AVSEVESAE---ASRDLTKL----LKQLPERQRLPIVHVKLEGL 139
            +DV  ++A+ +    A+ E  S E    S ++ K+    L  LPE  ++ I   +L+G+
Sbjct: 96  ANDVDAEEAEYYDGSDALKEFASPERLMLSDEIQKVVFDTLDTLPEELKMAISLRELDGM 155

Query: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSR 168
           S EE A +       V+  I R  +A+ +
Sbjct: 156 SYEEIANVMECPVGTVRSRIFRAREAIDK 184