Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Dechlorosoma suillum PS

 Score = 52.0 bits (123), Expect = 6e-12
 Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 13/176 (7%)

Query: 4   LLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQ 63
           L+ +  +GD+ A++  +      +   L SR  R PAE+ED+ Q+  +  + A  +++  
Sbjct: 10  LVERAQSGDKKAFELLVAKYQRKLGRLL-SRFIRDPAEVEDVAQEAFIKAYRALPSFRGD 68

Query: 64  QPLTAWVQAIARYKLADHLRSVSRR--------DARHDVLDDDAQLFAVSEVE----SAE 111
                W+  I      ++L +  RR            +  DD  QL  ++  E    S +
Sbjct: 69  SAFYTWLYRIGINTAKNYLVAQGRRAPTSTEFDSEEAETFDDGEQLRDINTPENLLLSKQ 128

Query: 112 ASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALS 167
               +   +  LPE  R  I+  +LEGLS EE A++       ++  I R  +A++
Sbjct: 129 IGETVNAAMDALPEELRTAIMLRELEGLSYEEIAKIMDCPIGTIRSRIFRAREAVA 184