Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

 Score = 65.5 bits (158), Expect = 6e-16
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLS---RRPAEIEDMVQDVLLAVHNAR 57
           + A++ + + GD+ A ++ L T+   V  + R+R+    R     +D+ Q+V LA   A 
Sbjct: 29  LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 88

Query: 58  HTYQPQ-QPLTAWVQAIARYKLADHLRSVSR-RDARHDVLDDDAQLFAVSEVESAEASR- 114
             Y+ + +P  A++  IA +K+AD  R+  R R    + L +     A  E  + EA   
Sbjct: 89  PRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSV 148

Query: 115 -DLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGA 173
             + +LL+ LP +QR  ++   + GLS EETA   G ++ AV+V  HR L+ L   I  A
Sbjct: 149 TRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEIVAA 208

Query: 174 NNH 176
            ++
Sbjct: 209 GDY 211