Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 216 a.a., Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) from Mycobacterium tuberculosis H37Rv

 Score = 52.4 bits (124), Expect = 5e-12
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 34  RLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHD 93
           R++R PA+ ED++Q+ ++  +    +++    L AW+  I      +  R   R+ A + 
Sbjct: 46  RMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYP 105

Query: 94  VLD-DDAQLFA----------VSEVESAEASRD--LTKLLKQLPERQRLPIVHVKLEGLS 140
                D QL +           +EVE+ EA  D  + + L+ LPE  R+ + +  +EG  
Sbjct: 106 TEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFP 165

Query: 141 VEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
            +E A++       V   +HRG + L  L+
Sbjct: 166 YKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195