Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 257 a.a., Alternative RNA polymerase sigma factor SigE from Mycobacterium tuberculosis H37Rv

 Score = 53.5 bits (127), Expect = 3e-12
 Identities = 43/152 (28%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 31  LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA 90
           L  RLS    + ED+ Q+  + V  +   YQP      W+  I      D +R  +R   
Sbjct: 98  LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGT-FEGWLHRITTNLFLDMVRRRAR--I 154

Query: 91  RHDVLDDDAQLFAVSE------VESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEET 144
           R + L +D       E         A    DL   L  LP   R  +V   +EGLS EE 
Sbjct: 155 RMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEI 214

Query: 145 AQLTGLSSSAVKVGIHRGLKALSRLIGGANNH 176
               G+    V+  IHRG +AL   +     H
Sbjct: 215 GATLGVKLGTVRSRIHRGRQALRDYLAAHPEH 246