Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

 Score = 47.0 bits (110), Expect = 3e-10
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 11/176 (6%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GD+ A+   +      V + + SR      E+ D+ Q+  +    A   ++       W+
Sbjct: 70  GDRAAFDLLVVKYQSRVASII-SRYVYDSQEVMDLTQETFVKAFRAIERFRGDSAFYTWL 128

Query: 71  QAIARYKLADHLRSVSRR------DARHDVLDDDAQLFAVSEVESA----EASRDLTKLL 120
             IA     ++L S  RR       A  +  DD ++L   +  E      +  ++L K +
Sbjct: 129 YRIAVNTAKNYLESRGRRPQGSADSAEAENFDDGSRLRDTASPERLLQREQLQKELNKAI 188

Query: 121 KQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGANNH 176
            QLPE  R   +  + +GLS E+ A +       V+  I R   A+ R +G   NH
Sbjct: 189 AQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAVDRHLGPLLNH 244