Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 189 a.a., RNA polymerase sigma factor from Marinobacter adhaerens HP15

 Score = 51.6 bits (122), Expect = 8e-12
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPL-TAW 69
           G++ A+       A  +R  +  R+   P    D+ QDV L + +  HT+  Q+    AW
Sbjct: 23  GERYAFHTLYQVEAPKIRGIIL-RIVGNPDLASDLTQDVFLKIWDKAHTFDAQRSRGRAW 81

Query: 70  VQAIARYKLADHLR--------SVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLK 121
           + ++AR+   D +R        + S +      L +D ++ A   +E  EA+ +L++ LK
Sbjct: 82  IHSVARHHALDEIRRRAQPLNQTSSEQVEELPSLVNDERILA--NLELNEATVNLSECLK 139

Query: 122 QLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL 166
           +L   +R  I    +EG + EE ++  G     VK    R LK L
Sbjct: 140 RLETDRRTAIYMAFVEGHTHEEISKRMGTPLGTVKSWARRSLKFL 184