Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 177 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 52.8 bits (125), Expect = 3e-12
 Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 31  LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA 90
           L  RL  + ++ E++ Q+  + V      ++ +   + W+  +   +    +R      A
Sbjct: 43  LSLRLCGQASQAEEITQECFILVWQKLPQFKGESQFSTWLHTLCVNQALSFIRKQKSFWA 102

Query: 91  RHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGL 150
           R   ++ DA+        S E  + L KL+ +LPER R+  V   +EG   EE AQL G+
Sbjct: 103 RFIPMESDAE-----HPSSDENYQGLDKLILKLPERARIVFVLCAIEGYQHEEIAQLLGI 157

Query: 151 SSSAVKVGIHRGLKALSRLI 170
           +    K   HR  + L  ++
Sbjct: 158 AVGTSKTQYHRAKQLLQEML 177