Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 192 a.a., RNA polymerase sigma-24 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 31  LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA 90
           L SR  R  A++ D+ Q+  +  + A   ++ +     W+  IA     ++L S  RR  
Sbjct: 36  LISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRAP 95

Query: 91  RHDVLDDDAQLFAVSE-----------VESAEASRDLTKLLKQLPERQRLPIVHVKLEGL 139
            +DV  +DA+ +  S+           + S E  + + + L+ LPE  R+ I   +L+G+
Sbjct: 96  ANDVDAEDAEYYEGSDALKEFASPERLMLSDEIKKVVFETLETLPEELRMAISLRELDGM 155

Query: 140 SVEETAQLTGLSSSAVKVGIHRGLKALSR 168
           S E+ A +       V+  I R  +A+ +
Sbjct: 156 SYEDIAIIMDCPVGTVRSRIFRAREAIDK 184