Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Klebsiella michiganensis M5al

 Score = 49.3 bits (116), Expect = 4e-11
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 13/171 (7%)

Query: 11  GDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWV 70
           GDQ A+ + L     H  A L SR    P +I D+VQ+  +    A  +++       W+
Sbjct: 17  GDQKAF-NLLVVRYQHKVASLVSRYVP-PGDIADVVQESFVKAWRALDSFRGDSAFYTWL 74

Query: 71  QAIARYKLADHLRSVSRRDARHDVLDDDAQLF-------AVSEVESAEASRDLTKL---- 119
             IA     ++L +  RR    DV  +DA+ F        +S  E+   S +L ++    
Sbjct: 75  YRIAVNTAKNYLVAQGRRPPSSDVDANDAENFESGGALKEISNPENLMLSEELRQIVFRT 134

Query: 120 LKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLI 170
           ++ LPE  R+ I   +L+G+S EE A +       V+  I R  +A+   +
Sbjct: 135 IESLPEDLRMAITLRELDGMSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 185