Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 197 a.a., RNA polymerase sigma factor RpoE from Dyella japonica UNC79MFTsu3.2

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 12/175 (6%)

Query: 3   ALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQP 62
           AL+ +   GD+ A+ D L     H    L SR     AE ED+ Q+  +    A  +++ 
Sbjct: 9   ALVERVQKGDKRAF-DLLVRKYQHKVIALISRYVNNYAECEDVAQEAFVRAWRAIGSFRG 67

Query: 63  QQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSE--VESAEASRDLTK-- 118
           +     W+  IA     +HL ++ RR    D+  DDA     S+   E+A   R+L +  
Sbjct: 68  ESAFYTWMYKIAVNTAKNHLVALGRRPPADDIAIDDAVFVPGSDRMQETATPERELLRQE 127

Query: 119 -------LLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKAL 166
                   ++ LPE  R  I   +++GLS EE A+  G     V+  I R  +A+
Sbjct: 128 IEQTVFATVQALPEELRTAITLREVDGLSYEEIAEAMGCPIGTVRSRIFRAREAI 182