Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 52.0 bits (123), Expect = 6e-12
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 4/146 (2%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           + AF  SR    P    D V D +L V      +Q +  +  W+ +IAR KL D LR   
Sbjct: 29  IYAFSLSRAGN-PELASDCVHDTMLDVWRTAAKFQGRSSVKTWLFSIARNKLVDALRKRG 87

Query: 87  RRDARHDV--LDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEET 144
           +     DV  ++D A     + + +AE +R L   L+ L   QR  +    LE L+  E 
Sbjct: 88  KHAYVEDVPEVEDTAPNPEAAAIAAAERAR-LHHCLEGLSGPQRAAVRLAFLEELTYPEV 146

Query: 145 AQLTGLSSSAVKVGIHRGLKALSRLI 170
           A++  +    +K  IH   +AL R +
Sbjct: 147 AEIEAVPVGTIKTRIHHAKRALMRCL 172