Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000

 Score =  132 bits (332), Expect = 3e-36
 Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTY 60
           +KAL+L+GL GD  AY++ L  L + +RA+   R+S  P ++ED+VQ+ LLAVH  R T+
Sbjct: 8   LKALMLRGLDGDTAAYREGLALLGVRLRAYFMRRMSGAPGDVEDLVQETLLAVHLKRSTW 67

Query: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLL 120
              Q  TAW  A+ARYKL DH R   RR  R  +  +D   F   +      + +L + L
Sbjct: 68  DSAQSFTAWAHAVARYKLIDHWR---RRKIRQTLPLEDHVDFLADDAPDPGVALELDRAL 124

Query: 121 KQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALS 167
             LP+RQR+ +  VKL GLS+ E     G+S  A KV +HR LKAL+
Sbjct: 125 ASLPQRQRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALA 171