Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 186 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 45.1 bits (105), Expect = 7e-10
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 31  LRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA 90
           L  RL     E  D+ Q+  + V  +  TY  +  L+ W+  I      D LRS+     
Sbjct: 35  LAFRLLCDEEEARDITQETFVKVWLSLKTYNQENRLSTWLYKITCNTCYDRLRSL----- 89

Query: 91  RHDVLD------DDAQLFAVSEVESAEASRDLTKLL----KQLPERQRLPIVHVKLEGLS 140
           RH  LD      D   + +   +E + +++ L +L+     +LP +Q+L      +E L 
Sbjct: 90  RHSPLDNESAFSDSVNIPSDDHIEISLSNKQLKELILRYTNELPPQQKLVFTLRDVEELE 149

Query: 141 VEETAQLTGLSSSAVKVGIHRGLK 164
           V E   +TGLS   +K  ++   K
Sbjct: 150 VAEVQIITGLSPEKIKSTLYLARK 173