Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.9 bits (102), Expect = 2e-09
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 41  EIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQ 100
           +  D++Q+  +        ++ +  L+ W+  IA   L + L  ++R+ A   V  DD +
Sbjct: 47  DANDLLQNTFIKAWTNIDYFRAEAKLSTWLYRIA---LNECLTFLNRQRATTTVAIDDPE 103

Query: 101 LFAVSEVESA------EASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSA 154
              V ++ES       +    L K L  LPE+QR+       + +  EE +++ G S  A
Sbjct: 104 AAIVQKLESDPYYSGDQVQMLLQKALLTLPEKQRMVFNLKYYQEMKYEEMSEIFGTSVGA 163

Query: 155 VKVGIHRGLKALSRLI 170
           +K   H  +K + + +
Sbjct: 164 LKASYHHAVKKIEKFL 179